I don't have exceptional storage for any of them except I do use an enamel bin from A Muse Studio for my Copics and keep one on my desk with all of the incidental tools I use all the time - scissors, files, tweezers, some drawing markers and pencils, x-acto, burnisher, waterbrushes, etc. Love this bin and it looks nice too!
My Prismacolor pencils are just in a big tin box they came in (plus some). I'd like to come up with something different for them - colored pencils are trickier because their height changes!
The others (Distress, Spica glitter and glaze pens) are in SU plastic cases in a fabric storage box from Target.